FastQCFastQC Report
Wed 31 May 2023
EGAF00007938294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489901
Sequences flagged as poor quality0
Sequence length33
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38520.7862813098973058No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22400.4572352373234593No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19900.40620451887218034No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13940.28454728608433133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13160.2686257019275323No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC11970.24433507994472353No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10790.22024858083571985No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACCCG10540.215145508990592No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT9840.20085690782423388No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9350.1908548870077832No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8620.17595391722000975No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8570.17493330285098418No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7860.16044057881082097No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7340.14982618937295494No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7330.14962206649914983No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7210.14717259201348845No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6940.14166127442075033No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6870.1402324143041145No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6790.13859943131367358No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6210.12676030463297688No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6010.12267784715687456No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5960.12165723278784897No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5670.11573766944750062No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5660.11553354657369551No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5650.11532942369989038No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACCCG5540.1130840720880341No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5400.1102263518547625No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5400.1102263518547625No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA5380.10981810610715226No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5130.10471503426202437No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5030.10267380552397322No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4910.10022433103831181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)