FastQCFastQC Report
Wed 31 May 2023
EGAF00007938299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483747
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10430.21560857224954366No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8200.16951009515304488No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG7220.14925157158597366No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7150.14780453418832573No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA6880.14222310422596934No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6300.13023336578831496No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5790.11969066474830851No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5010.10356653374594571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)