FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483747
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22620.4675997990685214No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15530.32103558264960813No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10260.2120943385695415No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC7490.15483300154833002No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC7280.15049188935538618No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7110.14697765567538404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6670.13788199203302554No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6140.12692585173654825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5310.10976812259300833No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5120.10584044965653533No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC4920.10170605709182692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)