FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482864
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14440.2990490075880579No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12780.2646707975744723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11290.23381324762251895No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6090.12612246926670864No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGC5930.12280890685576064No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5660.11721727028728586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)