FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481773
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19260.39977333723558606No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17860.37071400846456737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8380.1739408393579549No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7190.149240409902589No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7080.14695717692772323No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA6860.1423907109779917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5290.109802749427635No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5040.10461358357566738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)