FastQCFastQC Report
Sun 21 May 2023
EGAF00007938305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458775
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14120.30777614298948286No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13970.30450656639965124No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13270.28924854231377034No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG12990.283145332679418No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12060.262873957822462No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10380.22625470001634787No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9220.2009699743883167No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC8970.19552068007193069No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8860.19312299057272084No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA8520.18571195030243584No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG7670.16718434962672335No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7630.16631246253610157No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6150.1340526401830963No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCG5830.12707754345812217No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCC5530.12053839027845895No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5000.10898588632772055No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4970.10833197100975422No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4640.10113890251212468No Hit
CTCTGCTTCGCGGTGAATCCAGTTACGGGCTTCAACGCCTT4610.10048498719415835No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4590.10004904364884747No Hit

[OK]Adapter Content

Adapter graph