FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448799
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15890.35405604736195934No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15150.33756759707575107No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14750.3286549212453682No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14550.32419858333017676No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13880.30926985131428547No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12390.2760701338461093No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11130.24799520498040326No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10060.22415379713412908No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10030.22348534644685036No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA9950.22170281128077376No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT9820.21880619163589937No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9640.21479548751222707No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9180.20454591030728678No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG8580.19117689656171247No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7880.17557971385854249No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7580.16889520698575533No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7290.16243351700872774No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG7060.1573087284062576No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6840.152406756699547No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6540.14572224982675985No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6440.14349408086916415No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6350.141488728807328No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC6080.13547267262181958No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTT6040.13458140503878127No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6020.13413577124726214No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6020.13413577124726214No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5900.13146196849814729No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG5740.12789689816599414No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5680.1265599967914367No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5640.12566872920839842No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC5560.12388619404232185No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5480.12210365887624526No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5310.11831577164833255No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4880.10873464513067098No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4880.10873464513067098No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4530.10093605377908596No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG4490.10004478619604767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)