FastQCFastQC Report
Wed 31 May 2023
EGAF00007938308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448799
Sequences flagged as poor quality0
Sequence length33
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29290.6526306876797854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22010.4904199875668172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18920.42156956677710955No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15600.3475943573849318No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG14700.32754083676657036No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14020.3123892878549195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12650.28186337313585813No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12310.2742875986800327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11600.2584675990811031No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11560.25757633149806486No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11200.24955492325072023No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11030.24576703602280756No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT10270.2288329519450801No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9740.2170236564698228No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT9040.20142647376665276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8500.1893943613956359No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8220.1831554883143679No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC7900.17602534765006161No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7800.1737971786924659No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7770.1731287280051872No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7100.15819999598929588No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT6940.15463492565714274No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACCGT6790.15129267222074916No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6590.14683633430555773No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6480.14438534845220244No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6390.1423799963903663No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA6320.1408202781200493No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6060.13502703883030043No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5940.13235323608118557No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5660.12611436299991757No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC5640.12566872920839842No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5620.1252230954168793No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5570.12410901093808141No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5390.12009830681440911No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5370.11965267302288998No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5130.11430506752466026No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4770.10628365927731569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)