FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477603
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG10750.2250823382600193No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10690.22382606474414943No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10090.2112633295854507No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8570.1794377338500805No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7450.15598729488717616No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7120.14907779054989184No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6980.14614648567952881No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6840.1432151808091658No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6180.12939617213459714No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG4790.10029250235027837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)