FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477603
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15930.33354061846345184No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13130.274914521056191No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC10860.2273855063724474No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10330.2162884236489302No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8480.17755332357627568No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8410.17608767114109417No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8280.17336574519004277No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7140.14949654838851517No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6830.14300580188985412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.11620530021796346No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5060.1059457331716928No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT4840.10133939694683661No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4780.10008312343096672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)