FastQCFastQC Report
Sun 21 May 2023
EGAF00007938311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460506
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10930.23734761327756862No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9080.1971744124940826No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9050.1965229551840801No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6870.1491837239905669No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6310.13702318753718734No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5650.12269112671713289No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAA5030.1092276756437484No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4860.10553608422040103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)