FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457457
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12920.2824309170042212No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10650.23280876672561573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10350.22625077329672516No Hit
CGGACGGTATTTGGTACCGTTTGCCAGTTTCAGCGGGGTCT10190.22275317680131684No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9560.20898139060064663No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8410.18384241578989938No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8280.18100061863738012No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7320.16001503966493028No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA7210.15761044207433703No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7020.15345704623603967No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC6990.1528012468931506No Hit
TTCCAGAAAGCCGGCAATTGCACCGAAGAAGCCGCGTTCCT6900.15083384886448342No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCC6720.1468990528071491No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6490.14187125784499963No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5760.12591347383469922No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5630.12307167668217996No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5610.12263447712025392No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5590.12219727755832788No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5420.11848108128195654No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5360.11716948259617845No Hit
AATAGACGCAGAGTTGTTACGAGCAGTCACTTTAGATGCGC5190.11345328631980711No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG5130.11214168763402899No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5120.11192308785306598No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4940.10798829179573162No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA4870.10645809332899049No Hit
TTTCAGCAGTTTGGCTGGCGGACGGTATTTGGTGCCGTTCG4810.10514649464321237No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4770.10427209551936029No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT4750.10383489595743424No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4750.10383489595743424No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA4610.10077449902395198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)