FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457457
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20670.45184574725056126No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18880.41271638645818076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16670.3644058348653535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14780.3230904762633428No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTCTG10660.23302736650657874No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10640.23259016694465273No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10460.22865537088731838No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9480.20723259235294247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7870.17203802761789633No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7680.16788463177959895No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT7490.16373123594130157No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC7290.15935924032204118No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7090.1549872447027808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6810.14886645083581626No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACAAA6710.14668045302618607No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA6660.14558745412137097No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6470.1414340582830736No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6170.13487606485418302No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5840.12766227208240338No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5810.12700647273951432No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5700.1246018751489211No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5400.11804388172003052No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5270.11520208456751126No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5240.11454628522462221No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5120.11192308785306598No Hit
GGTGCCGGCAAAGCACTGTCTGCAGTCAAAGAT4940.10798829179573162No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.10755109223380557No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC4860.10623949354802746No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA4790.10470929508128632No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTGGT4780.10449069530032332No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA4770.10427209551936029No Hit
CCGCAGTGCGCCCTGATCCAGATCACCAAACGT4760.10405349573839727No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC4760.10405349573839727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)