FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451546
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16740.3707263490319923No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16680.36939758075589196No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14140.31314639040097797No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13810.30583816488242616No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12560.2781554924636693No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11760.26043858211566484No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10850.2402855965948098No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10340.22899106624795704No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA8380.1855846358953462No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8320.18425586761924587No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8270.1831485607224956No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7920.17539741244524368No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7610.16853210968539198No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG7460.16521018899514114No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7010.15524442692438867No Hit
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA6720.14882204692323706No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6480.14350697381883573No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6380.14129236002533518No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6020.1333197503687332No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5990.13265536623068303No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5470.12113937450448017No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4870.10785169174347686No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4810.10652292346737652No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4690.10386538691517587No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAG4690.10386538691517587No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4690.10386538691517587No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4660.1032010027771257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)