FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451546
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36150.8005828863504493No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31480.6971604221939736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21660.47968534767221943No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17040.377370190412494No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15350.3399432173023347No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14000.3100459310900772No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11570.25623081590801383No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10190.2256691455577062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9340.2068449283129515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9170.20308008486400056No Hit
CCGGATTTTGAACAGAACATTGCGACCACCACC8570.18979240210299725No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7690.1703038007201924No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC7570.16764626416799175No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7270.16100242278749008No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC6690.14815766278518688No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6520.14439281933623593No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6400.1417352827840353No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6120.13553436416223374No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG5720.12667590898823156No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5190.1149384558826786No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5120.11338822622722823No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG4900.10851607588152701No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4820.10674438484672658No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4810.10652292346737652No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC4760.10541561657062624No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4630.10253661863907552No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC4600.10187223450102535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)