FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487561
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16950.34764880702107015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15000.307653811523071No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14800.30355176070276335No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10970.22499748749387258No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG10890.2233566671657495No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8850.18151574879861188No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7770.15936467436895074No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7440.15259629051544318No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7160.14685341936701254No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7120.14603300920295104No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7010.14377688125178184No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6480.13290644657796666No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6380.13085542116781285No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG5690.11670334583775159No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5460.11198598739439783No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5400.11075537214830554No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5380.11034516706627479No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4910.10070534763855189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)