FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487561
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36990.758674299215893No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22820.4680439985970986No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG14750.30252624799768646No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11010.22581789765793409No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT10580.2169984883942727No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9260.18992495298024248No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8820.18090044117556572No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8050.1651075455173814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7760.1591595718279354No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7590.1556728286306739No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7340.1505452651052894No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7260.14890444477716633No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6650.13639318977522813No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6570.13475236944710509No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6530.13393195928304355No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6190.1269584728885206No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5980.12265131952719761No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT5950.12203601190415149No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5850.11998498649399766No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5120.10501250099987489No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5050.10357678321276723No Hit

[OK]Adapter Content

Adapter graph