FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455055
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22080.48521607278241097No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20790.4568678511388733No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13270.2916131017129797No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9980.2193141488391513No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8730.19184494182021952No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7300.16042016899056158No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6320.1388843106877191No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6180.1358077595015987No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6050.1329509619716298No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5710.12547933766248034No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGT5450.11976574260254254No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5380.11822746700948236No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4620.10152618914197185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)