FastQCFastQC Report
Sun 21 May 2023
EGAF00007938320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455055
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG52001.142719011987562No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20870.45862588038808494No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19760.4342332245552735No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13270.2916131017129797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8500.1867906077287361No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7870.17294612739119447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7670.16855105426816538No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6790.14921273252683742No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6510.1430596301545967No Hit
CATTCTAACGATCAGCACGCGGGTGATCACATC5890.12943490347320652No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5720.12569909131863183No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5510.12108426453945127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)