FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476427
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA21580.4529550172429354No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20420.4286071108480418No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15800.3316352767580343No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA15330.3217701767532067No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG13930.29238477248350747No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9690.20338897669527545No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8020.16833638731641995No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7430.15595253837418954No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6870.14419837666630986No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6850.14377858517674272No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6590.13832129581237No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6570.13790150432280288No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6450.13538275538540007No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6340.13307390219278084No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6150.12908588304189308No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5940.12467807240143822No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5670.11901088729228192No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG5540.11628224261009557No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5080.10662703835005152No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT4850.1017994362200295No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4780.10033016600654455No Hit

[OK]Adapter Content

Adapter graph