FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480961
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC12170.2530350693715291No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9080.1887886959649535No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8570.17818492559687793No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7920.16467031630423257No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT7840.16300697977590697No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7070.14699736569077326No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6010.12495815669045932No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5850.12163148363380814No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5820.12100773243568605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5600.11643355698279072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)