FastQCFastQC Report
Sun 21 May 2023
EGAF00007938324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480961
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21800.45325920396872094No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15100.31395476972145353No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC12060.2507479816450814No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11560.24035212834304653No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8430.17527408667230815No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7990.16612573576651746No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG7790.1619673944457035No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6290.13077983453959885No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6250.12994816627543607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6190.12870066387919188No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5320.11061187913365117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5120.1064535378128372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)