FastQCFastQC Report
Sun 21 May 2023
EGAF00007938325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516478
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13660.26448367597458167No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA13620.2637091996174087No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG13430.2600304369208369No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11760.22769604900886387No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT10730.20775328281165897No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT9620.18626156390010803No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9370.18142108666777673No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8940.17309546582816693No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8910.17251460856028716No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8170.15818679595258656No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6860.1328226952551706No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6840.13243545707658408No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6780.13127374254082458No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6420.12430345532626753No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6260.12120554989757551No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5940.11500973904019145No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5920.11462250086160496No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5780.11191183361149942No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5690.11016926180786016No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5620.1088139281828074No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5450.10552240366482211No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5310.10281173641471661No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5250.1016500218789571No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5180.10029468825390433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)