FastQCFastQC Report
Sun 21 May 2023
EGAF00007938326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516478
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22600.43757914180274865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13660.26448367597458167No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG13290.2573197696707314No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13170.2549963405992124No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT13060.25286653061698655No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12480.241636623437978No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA11030.2135618554904565No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10110.19574889927547737No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9970.19303823202537185No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9670.1872296593465743No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9560.18509984936434853No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9380.18161470575707No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA9360.1812274675784835No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7330.1419227924519534No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7030.13611421977315588No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6660.12895031346930558No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6530.12643326530849328No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6460.12507793168344053No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6330.12256088352262827No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6300.1219800262547485No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6280.121592788076162No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6110.11830126355817673No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5960.11539697721877795No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5840.11307354814725894No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5720.11075011907573991No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5610.10862030909351415No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5360.10377983186118285No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG5240.10145640278966385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)