FastQCFastQC Report
Wed 31 May 2023
EGAF00007938327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468231
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11980.2558566177805399No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9700.20716270387906824No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9230.19712492338183504No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8340.178117211376436No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8310.17747650198299558No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5940.12686045990120262No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5560.11874480758429067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)