FastQCFastQC Report
Sun 21 May 2023
EGAF00007938328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468231
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23220.49590907052288297No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20120.4297024332007065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12410.26504011908651925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11980.2558566177805399No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5910.12621975050776219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)