FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483314
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10800.223457214150635No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10400.21518102103394482No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8760.18124862925551505No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8560.17711053269716995No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7940.16428243336630016No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7580.15683385956127902No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7560.15642004990544447No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7230.14959219058417508No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6520.13490194780205No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT6200.12828099330869785No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6180.12786718365286337No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6130.1268326595132771No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5850.12103932433159396No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5830.12062551467575944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5590.11565979880574534No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG5550.1148321794940763No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5490.11359075052657279No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5280.10924574914031045No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5150.10655598637738613No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5110.1057283670657171No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG4980.10303860430279281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)