FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481871
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13510.2803654920092722No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12410.257537805761293No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11090.2301445822637179No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10570.2193533124010368No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8970.1861494051312488No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7430.1541906443840779No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6790.1409090814761627No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6330.13136295813609866No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5300.10998794283117266No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5080.10542240558157681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)