FastQCFastQC Report
Sun 21 May 2023
EGAF00007938342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481871
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT27480.5702771073586084No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23800.4939081206380961No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22940.476061020480585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14910.3094189108703367No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14210.29489220143980444No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9940.20627927391355777No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5510.11434595566033232No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5420.11247823587640676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)