FastQCFastQC Report
Sun 21 May 2023
EGAF00007938345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519961
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18980.365027377053279No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17470.3359867374668485No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12010.2309788618761792No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8240.15847342396833608No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8110.15597323645427252No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6900.13270226036183483No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6320.12154757760678205No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6170.11866274585978563No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5270.10135375537780719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)