FastQCFastQC Report
Wed 31 May 2023
EGAF00007938346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519961
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG42740.8219847257775103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16510.31752381428607146No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8810.16943578460692246No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8120.15616555857073897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7560.14539552004861905No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6770.13020207284777127No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6500.12500937570317774No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6100.11731649104452065No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5770.11096986120112855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5730.11020057273526283No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5730.11020057273526283No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5440.10462323135773643No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5300.10193072172720646No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCGAC5290.10173839961074004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)