FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523496
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8980.17153903754756483No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8240.15740330394119534No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5790.11060256429848557No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5460.10429879120375322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)