FastQCFastQC Report
Sun 21 May 2023
EGAF00007938348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523496
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20000.3820468542262023No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6710.12817671959289087No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6080.11614224368476549No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5850.11174870486116417No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5760.11002949401714625No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5540.10582697862065804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)