FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502220
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14090.2805543387360121No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12290.24471347218350523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11090.22081956114850068No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9160.18239018756720163No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC8290.1650671020668233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7250.144359045836486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6830.13599617697423438No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6030.120066902950898No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTTCC5910.11767751184739755No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5750.11449165704273027No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5430.10811994743339573No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5320.10592967225518696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)