FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449949
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21200.4711645097555501No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18320.40715725560007915No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16110.35804057793216565No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC12820.28492117995595057No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT12690.2820319636225439No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12010.26691913972472436No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC10860.24136068754458836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10110.2246921317749345No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG9260.20580110190266007No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8700.19335524692798517No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC8330.18513209274828923No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG8320.18490984533802718No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8210.18246512382514463No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7800.1733529800044005No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7630.1695747740299456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7280.1617961146707738No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG7160.15912914574762918No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7150.15890689833736713No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6970.15490644495265019No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6940.15423970272186405No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC6620.1471277855934784No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6600.14668329077295428No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6390.14201609515745117No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6040.13423743579827938No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6020.13379294097775526No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT5670.12601428161858344No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5630.12512529197753522No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5570.12379180751596291No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5560.12356956010570086No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5300.11779112743888752No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT4980.11067921031050186No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4900.10890123102840545No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC4770.10601201469499877No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT4530.10067807684870952No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGTTC4520.10045582943844747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)