FastQCFastQC Report
Wed 31 May 2023
EGAF00007938353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473569
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5850.12353004525211743No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5480.11571703384300916No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5030.10621472266976935No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT4750.10030217349530904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)