FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473569
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12850.27134377461362547No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9180.19384714793409197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5920.1250081825457325No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5500.11613935878404204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC4790.1011468233773748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)