FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476269
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11600.24355983698288153No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10920.22928219136664363No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9860.20702586143544927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8720.1830898084905799No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7110.14928538284036963No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6820.14319638691579759No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6540.1373173563679349No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5920.12429950301195333No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5470.1148510610600312No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5320.11170158040939047No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5190.10897203051216856No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5040.10582254986152782No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4830.10141327695063083No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA4810.10099334619721209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)