FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476269
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15860.33300508746107765No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11830.24838904064719727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11390.2391505640719845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9830.20639596530532114No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9080.1906485620521176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7630.16020358242925742No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7320.15369465575126662No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7130.14970531359378839No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7020.1473956944499852No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5770.12115002236131261No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5570.116950714827125No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5480.11506102643674058No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.1148510610600312No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5410.11359126879977492No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5360.11254144191622802No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG4790.10057341544379332No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4770.10015348469037456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)