FastQCFastQC Report
Sun 21 May 2023
EGAF00007938357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470983
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA18530.39343245934566645No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16260.3452353906616587No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15030.31911979837913473No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT12790.2715596953605544No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10090.21423278547208713No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9350.19852096572487754No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8610.18280914597766798No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7220.1532964034795311No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7140.15159782837172467No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG7010.14883764382153922No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTG6930.14713906871373278No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6200.131639570854999No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5770.12250972965053941No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5750.12208508587358778No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG5540.11762632621559589No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5440.11550310733083784No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA5270.11189363522674917No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC4800.10191450646838632No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4780.10148986269143473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)