FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470983
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT33380.7087304637322366No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22790.48388158383635926No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG17330.3679538327285698No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16910.359036313412586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT16880.3583993477471586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11380.24162230908546592No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC10290.21847922324160318No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9340.19830864383640173No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACCCG7200.15287175970257952No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7050.14968693137544242No Hit
CCGTTCGCCTCTGATTACTCCCAGGGTGCGTTC7030.1492622875984908No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6520.13843387128622478No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC5960.1265438455315797No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5780.1227220515390152No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5720.12144812020816037No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5520.11720168243864429No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5410.11486614166541043No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5360.11380453222303141No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA5250.11146899144979755No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5050.10722255368028144No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG4940.1048870129070476No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4800.10191450646838632No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4780.10148986269143473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)