FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449312
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6370.1417723096645538No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5100.11350687272986255No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5050.1123940602521188No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4730.1052720603945588No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC4630.1030464354390713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)