FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429922
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12230.2844702062234545No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT10600.24655635208247076No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10000.23260033215327433No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9090.21143370192732636No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8610.2002688859839692No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8000.18608026572261943No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7620.17724145310079503No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7330.17049604346835007No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7270.16910044147543044No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6920.1609594298500658No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6870.15979642818929946No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5960.13862979796335148No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG5930.13793199696689168No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5790.13467559231674583No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5720.1330473899916729No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5570.12955838500937378No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG5510.12816278301645415No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG5280.12281297537692884No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5230.12164997371616247No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG5230.12164997371616247No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4980.1158349654123306No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4870.1132763617586446No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4520.10513535013327999No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA4450.10350714780820708No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4330.10071594382236777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)