FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429922
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20630.4798544852322049No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17980.41821539721158724No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10560.24562595075385768No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT9810.2281809258423621No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9180.21352710491670582No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8620.20050148631612247No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7990.18584766539046618No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7800.18142825907955396No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7520.1749154497792623No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7410.17235684612557628No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7180.16700703848605097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6600.15351621922116104No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6450.15002721423886192No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6240.14514260726364317No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5900.13723419597043185No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5830.13560599364535894No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5820.13537339331320564No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5810.13514079298105236No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5780.13444299198459256No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5650.1314191876666No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC5420.12606938002707468No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5360.12467377803415504No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5360.12467377803415504No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC5330.12397597703769521No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5280.12281297537692884No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5110.11885876973032317No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5100.1186261693981699No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTCAC4660.10839175478342582No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC4370.10164634515098087No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4330.10071594382236777No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG4300.10001814282590796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)