FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518571
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15820.30506912264665786No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15240.2938845404004466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14940.2880994116524063No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT13630.2628376827859637No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13110.25281012628936056No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12600.24297540741769208No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12350.23815446679432517No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10550.20344369430608344No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT9560.1843527694375505No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8980.17316818719133928No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8770.16911859706771107No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7660.14771362069996202No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7620.1469422702002233No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7320.14115714145218303No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7120.1373003889534895No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6540.12611580670727826No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5640.10876042046315741No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5530.10663920658887598No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5530.10663920658887598No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5410.10432515508965985No Hit

[OK]Adapter Content

Adapter graph