FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518571
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT34090.6573834634023114No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21300.41074414111086044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC18020.34749340013228663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT17060.3289809881385577No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC13790.26592308478491855No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12640.24374675791743078No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA12260.2364189281699131No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11270.21732800330138013No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC9540.18396709418768115No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9530.18377425656274646No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8320.16044090394565064No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7980.15388442469787164No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7590.14636375732541929No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7080.13652903845375078No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6760.13035823445584116No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6080.11724527596028317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5780.11146014721224289No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5630.10856758283822274No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5500.10606069371407194No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG5310.10239677884031309No Hit

[OK]Adapter Content

Adapter graph