FastQCFastQC Report
Wed 31 May 2023
EGAF00007938367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539350
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18660.3459720033373505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG16260.3014739964772411No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13220.2451098544544359No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9490.17595253545934922No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6290.11662185964587002No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5580.10345786594975434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)