FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557583
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18800.3371695335044289No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8660.1553132000078912No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8660.1553132000078912No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8600.15423712702862175No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8200.1470633071668254No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7860.1409655602842985No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7630.1368406138637656No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7380.13235697645014285No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6700.12016148268508904No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6690.11998213718854413No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5750.10312366051332268No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5730.10276496952023287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)