FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538282
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG91011.6907494584622929No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35810.6652646753931954No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26440.4911923489917924No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20130.3739675486083503No Hit
ATGTCCAACATGGACATCGATGGTATTAACA17510.3252941766583315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16870.3134044980140521No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15540.28869625958140904No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14460.26863242686918753No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG12680.23556425813978546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11270.20936980987660744No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9850.18298958538461252No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9680.17983138949472582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9590.178159403435374No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8780.16311152890120792No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8180.151964955172196No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7780.14453390601952137No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7710.1432334724178033No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7190.1335731085193263No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6680.12409852084966616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6470.12019722004451198No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6410.1190825626716108No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6360.11815368152752646No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5970.11090840860366871No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5940.11035107991721811No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5600.1040346881374447No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5560.10329158322217723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)