FastQCFastQC Report
Wed 31 May 2023
EGAF00007938388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535592
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28360.5295075355867899No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21560.4025452209891111No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12170.2272252012726105No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9690.18092129830169235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9460.17662698471971203No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8770.1637440439737711No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8330.15552883538215656No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8290.15478199823746433No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7890.14731362679054205No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7500.14003196462979284No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6640.12397496601890992No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6240.11650659457198764No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5630.10511732811543115No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5490.10250339810900835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)